Frequently Asked Questions

• Smaller callsets for analyzing short read WGS SNP & Indel data with Hail MT, VCF, and PLINK
• Downloading and Disseminating Genomic Data
• How can we find the sequencing depth for the WGS data?
• How do I select specific variants from the Hail MatrixTables or Hail VDS?
• What reference are the variants called against for the genomic data?
• Are array data imputed?
• Recommendations for processing CRAMs with GATK on the Researcher Workbench