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  3. Working with Genomic Data

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Working with Genomic Data

  • All of Us Pharmacogenomics (Star Allele) Calling
  • Smaller Callsets for Analyzing Short Read WGS SNP & Indel Data with Hail MT, VCF, and PLINK
  • Getting Started with Genomic Analyses on the Researcher Workbench
  • How the All of Us Genomic data are organized
  • Controlled CDR Directory
  • Selecting Genomic data: using the Genomic Extraction tool
  • Variant Annotation Table
  • The new VariantDataset (VDS) format for All of Us short read WGS data
  • Accessing Genomic Data in the All of Us Controlled Tier
  • Using the Integrative Genomics Viewer (IGV)
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