Working with Genomic Data

• All of Us Pharmacogenomics (Star Allele) Calling
• Smaller Callsets for Analyzing Short Read WGS SNP & Indel Data with Hail MT, VCF, and PLINK
• Getting Started with Genomic Analyses on the Researcher Workbench
• How the All of Us Genomic data are organized
• Controlled CDR Directory
• Selecting Genomic data: using the Genomic Extraction tool
• Variant Annotation Table
• The new VariantDataset (VDS) format for All of Us short read WGS data
• Accessing Genomic Data in the All of Us Controlled Tier
• Using the Integrative Genomics Viewer (IGV)