Samantha Stewart
Articles
Recent activity by Samantha Stewart
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Researcher Workbench Getting Started Guide
The following getting started guide includes information for accessing and exploring Researcher Workbench. For a video overview, see this Office Hours SessionFor a PDF copy of this guide, see here....
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Getting Started with Genomic Analyses on the Researcher Workbench
Efficient genomic analysis requires strategic planning and adherence to best practices, especially when dealing with large datasets and complex computational tools like Hail. This article outlines ...
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All of Us Genomic Quality Report (Archived C2022Q4R13 CDRv7)
This document details the All of Us Genome Centers (GC) and Data and Research Center (DRC) quality control (QC) steps for genomic data in the research pipeline. This pipeline removes or flags sampl...
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Catalog of Events for Researchers
We host several live, virtual events for researchers using the All of Us Researcher Workbench. Events support researchers with different technical and support needs, ranging from introductory to ad...
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Benchmarking and quality analyses on the All of Us short-read structural variant catalog
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Data Explorer in Researcher Workbench
In the Researcher Workbench cohorts and datasets can be created through the Data Explorer, powered by Verily Pre. Data Explorer lets you visually explore data, design custom cohorts, and export dat...
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All of Us Data and Research Center Policy on Sensitive U.S. Data Protection
Updated April 9th, 2025 Background On January 8, 2025, the U.S. Department of Justice issued a new rule prohibiting access to certain sensitive personal data and biospecimens of U.S. persons and U....
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Paying for Your Research | Office Hours 9.27.24
In this video, Brandy Mapes, MLIS from the Data and Research Center provides a high-level overview of billing in the All of Us Researcher Workbench and will help answer questions you have related t...
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Release of the CDRv7 Dataset | Office Hours 4.28.23
In this video, Michael Lyons, Ph.D. from our team gives an overview of the new Curated Data Repository (CDR) v7 dataset that was released to the All of Us Researcher Workbench in April 2023. During...
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Using All of Us Data for Genomic Research | Real World Applications
In this video, our team is first joined by Alexander Bick, M.D., Ph.D., an Assistant Professor of Medicine at Vanderbilt University School of Medicine. Dr. Bick presents their research using All of...
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- -1 votes