In this tutorial (requires @researchallofus.org login), you will learn how to set up your Cloud Environment and use Cromwell to execute an example script, validate_vcf.wdl. This workflow uses the GATK ValidateVariants tool to validate VCF files. VCF files, corresponding index files, and the human reference genome assembly are provided to the workflow as inputs. The duration of this tutorial should be around 20 minutes.
How to run WDLs using Cromwell in the Researcher Workbench
- Updated