The following release notes cover the most recent changes over the last two months. If you have any questions, email the All of Us Researcher Workbench support team at support@researchallofus.org.
All of Us Researcher Workbench features and updates
- RStudio - RStudio is available in the Researcher Workbench! Read Using RStudio on the Research Workbench to learn more about using the RStudio application in your workspace.
- SAS Studio - SAS Studio is available in the Researcher Workbench! Read How to run SAS in the Researcher Workbench and Exploring All of Us data using SAS to learn more about using the SAS application in your workspace.
- Docker Hub - The Researcher Workbench supports access to publicly available docker images from Docker Hub. Read how to use publicly available docker images from Docker Hub on the Researcher Workbench.
- Workspace deletion - Researchers are now notified of a running application when they attempt to delete a workspace. We recommend you delete all environments or running applications prior to deleting a workspace.
Bug fixes
- Researchers experienced a “Multiple Absorb Accounts” sync issue after successful completion of the training module. This issue has been resolved.
- Researchers experienced an infinite spinner when saving a concept set with the name of another concept set from another data domain. This issue has been resolved.
- When creating a new concept set for surveys, the search term remained in the search bar and did not allow researchers to clear the search. This issue has been resolved.
- We found two new known issues in the array and short-read genomic data. We released updated array merged Hail MT and PLINK bed files and list files with the research IDs of the affected samples. We recommend that researchers upgrade their analyses to use the new array data or remove affected srWGS samples.
Support resources
- We updated the Exporting and analyzing your data in Researcher Workbench applications article to include information on how to export a dataset from Dataset Builder to a RStudio or SAS analysis environment.
- Two new Office Hours informational sessions are available in the Video Library, including Using RStudio in the Researcher Workbench and How to comply with All of Us policies.
- We have updated the Best Practices for All of Us Data Science featured workspace with a notebook on optimized filtering workflow for Single Nucleotide Polymorphisms (SNPs). The notebook shows how to use a custom list of SNPs and samples and then how to save the filtered data to other formats, such as PLINK files for downstream analysis.
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